5XRZ
Structure of a ssDNA bound to the inner DNA binding site of RAD52
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-12-07 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.10000 |
Spacegroup name | P 1 |
Unit cell lengths | 67.621, 101.420, 101.710 |
Unit cell angles | 91.89, 108.68, 108.17 |
Refinement procedure
Resolution | 45.703 - 3.600 |
R-factor | 0.2188 |
Rwork | 0.216 |
R-free | 0.25650 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1kn0 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.480 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 95.300 | 3.700 |
High resolution limit [Å] | 3.600 | 3.600 |
Rmerge | 0.103 | 0.400 |
Rmeas | 0.145 | 0.565 |
Rpim | 0.103 | 0.400 |
Number of reflections | 27023 | 4412 |
<I/σ(I)> | 7.5 | 2.7 |
Completeness [%] | 96.9 | 97.1 |
Redundancy | 3.3 | 3.4 |
CC(1/2) | 0.972 | 0.597 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | calcium acetate, PEG 3,350 |