5XIH
Crystal Structure of Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in complex with inhibitor 5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM14 |
Synchrotron site | ESRF |
Beamline | BM14 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-03-23 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.9797 |
Spacegroup name | P 1 |
Unit cell lengths | 76.710, 90.763, 93.034 |
Unit cell angles | 89.71, 80.58, 75.77 |
Refinement procedure
Resolution | 47.060 - 2.200 |
R-factor | 0.1789 |
Rwork | 0.176 |
R-free | 0.22560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4twa |
RMSD bond length | 0.013 |
RMSD bond angle | 1.532 |
Data reduction software | MxCuBE |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.240 |
High resolution limit [Å] | 2.200 | 5.970 | 2.200 |
Rmerge | 0.020 | 0.008 | 0.190 |
Rmeas | 0.024 | 0.009 | 0.240 |
Rpim | 0.014 | 0.005 | 0.144 |
Number of reflections | 118866 | 5841 | |
<I/σ(I)> | 13.5 | ||
Completeness [%] | 98.5 | 99.7 | 97.4 |
Redundancy | 2.8 | 2.8 | 2.8 |
CC(1/2) | 0.988 | 0.917 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 10%(w/v) PEG 8K, 20%(v/v) ethylene glycol, 0.03M of each divalent cation and 0.1M MOPS/HEPES-Na |