5XEQ
Crystal Structure of human MDGA1 and human neuroligin-2 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97950 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 154.875, 69.134, 108.843 |
Unit cell angles | 90.00, 115.31, 90.00 |
Refinement procedure
Resolution | 49.199 - 3.136 |
R-factor | 0.2385 |
Rwork | 0.234 |
R-free | 0.27790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bl8 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.680 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.200 | 49.200 | 3.350 |
High resolution limit [Å] | 3.140 | 8.870 | 3.140 |
Rmerge | 0.075 | 0.040 | 0.261 |
Rmeas | 0.078 | 0.042 | 0.272 |
Rpim | 0.022 | 0.013 | 0.075 |
Total number of observations | 236647 | 10309 | 42385 |
Number of reflections | 18485 | 3292 | |
<I/σ(I)> | 22.9 | 46.1 | 8.4 |
Completeness [%] | 100.0 | 99.4 | 100 |
Redundancy | 12.8 | 11.8 | 12.9 |
CC(1/2) | 0.991 | 0.978 | 0.993 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 296 | 300mM Ammonium citrate tribasic, pH 7.0, 13% 1,3-Butanediol and 18%(v/v) PEG3350 |