5X5V
Crystal structure of pseudorabies virus glycoprotein D
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL19U1 |
| Synchrotron site | SSRF |
| Beamline | BL19U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-03-16 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.979 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 79.398, 60.975, 60.681 |
| Unit cell angles | 90.00, 111.22, 90.00 |
Refinement procedure
| Resolution | 23.531 - 1.500 |
| R-factor | 0.1703 |
| Rwork | 0.169 |
| R-free | 0.19230 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2c36 |
| RMSD bond length | 0.006 |
| RMSD bond angle | 1.090 |
| Data reduction software | HKL-3000 |
| Data scaling software | HKL-3000 |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 1.550 |
| High resolution limit [Å] | 1.500 | 1.500 |
| Rpim | 0.129 | |
| Number of reflections | 42212 | |
| <I/σ(I)> | 25.5 | |
| Completeness [%] | 97.6 | |
| Redundancy | 6.1 | |
| CC(1/2) | 0.966 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 0.1 M ammonium acetate 0.1 M bis-tris pH 5.5 17 % PEG 10,000 |






