5WKM
2.25 A resolution structure of MERS 3CL protease in complex with piperidine-based peptidomimetic inhibitor 21
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 100.626, 58.114, 49.862 |
Unit cell angles | 90.00, 112.07, 90.00 |
Refinement procedure
Resolution | 46.626 - 2.250 |
R-factor | 0.1646 |
Rwork | 0.161 |
R-free | 0.22820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rsp |
RMSD bond length | 0.012 |
RMSD bond angle | 1.193 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.25) |
Phasing software | PHASER |
Refinement software | PHENIX ((dev_2838)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.630 | 46.630 | 2.320 |
High resolution limit [Å] | 2.250 | 9.000 | 2.250 |
Rmerge | 0.087 | 0.020 | 0.624 |
Total number of observations | 42870 | ||
Number of reflections | 12726 | ||
<I/σ(I)> | 12.2 | ||
Completeness [%] | 99.7 | 98.5 | 99.8 |
Redundancy | 3.4 | 3.2 | 3.3 |
CC(1/2) | 0.997 | 0.999 | 0.776 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 25% (w/v) PEG 3350, 100 mM Bis-Tris, 200 mM MgCl2 |