5WIV
Structure of the sodium-bound human D4 Dopamine receptor in complex with Nemonapride
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.033 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 67.861, 162.836, 83.181 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.687 - 2.143 |
R-factor | 0.1969 |
Rwork | 0.195 |
R-free | 0.22690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5wiu |
RMSD bond length | 0.008 |
RMSD bond angle | 1.075 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.000 | 30.000 | 2.210 |
High resolution limit [Å] | 2.143 | 4.920 | 2.150 |
Rmerge | 0.110 | 0.073 | 0.659 |
Rmeas | 0.122 | 0.081 | 0.781 |
Rpim | 0.050 | 0.034 | 0.408 |
Number of reflections | 24926 | ||
<I/σ(I)> | 5.6 | ||
Completeness [%] | 97.2 | 97.4 | 85.7 |
Redundancy | 5.1 | 5.5 | 3 |
CC(1/2) | 0.993 | 0.652 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 293 | 100 mM Tris-HCl, pH 5.9-6.2, 100-140 mM ammonium phosphate dibasic, 180-200 mM sodium chloride, 34% PEG400 |