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5WIV

Structure of the sodium-bound human D4 Dopamine receptor in complex with Nemonapride

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]100
Detector technologyPIXEL
Collection date2015-11-11
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.033
Spacegroup nameC 2 2 21
Unit cell lengths67.861, 162.836, 83.181
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.687 - 2.143
R-factor0.1969
Rwork0.195
R-free0.22690
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5wiu
RMSD bond length0.008
RMSD bond angle1.075
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.00030.0002.210
High resolution limit [Å]2.1434.9202.150
Rmerge0.1100.0730.659
Rmeas0.1220.0810.781
Rpim0.0500.0340.408
Number of reflections24926
<I/σ(I)>5.6
Completeness [%]97.297.485.7
Redundancy5.15.53
CC(1/2)0.9930.652
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1LIPIDIC CUBIC PHASE293100 mM Tris-HCl, pH 5.9-6.2, 100-140 mM ammonium phosphate dibasic, 180-200 mM sodium chloride, 34% PEG400

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