5WI8
Crystal structure of murine 4-1BB from HEK293T cells in P21 space group
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.976 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 65.011, 61.763, 110.750 |
Unit cell angles | 90.00, 91.53, 90.00 |
Refinement procedure
Resolution | 40.000 - 2.950 |
R-factor | 0.2376 |
Rwork | 0.235 |
R-free | 0.27910 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.485 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 3.060 |
High resolution limit [Å] | 2.950 | 6.350 | 2.950 |
Rmerge | 0.129 | 0.082 | 0.283 |
Rmeas | 0.154 | 0.097 | 0.348 |
Rpim | 0.084 | 0.051 | 0.199 |
Total number of observations | 53045 | ||
Number of reflections | 17070 | ||
<I/σ(I)> | 6.9 | ||
Completeness [%] | 91.8 | 96.2 | 67.5 |
Redundancy | 3.1 | 3.3 | 2.4 |
CC(1/2) | 0.984 | 0.916 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295.15 | 0.1 M sodium acetate pH 4.5, 30% w/V polyethylene glycol (PEG) 8000, and 0.2 M lithium sulfate |