5WB2
US28 bound to engineered chemokine CX3CL1.35 and nanobodies
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-08-07 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.03323 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 47.170, 128.940, 127.740 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.374 - 3.500 |
R-factor | 0.2563 |
Rwork | 0.252 |
R-free | 0.29620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xt1 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.701 |
Data reduction software | XDS (May 1, 2016) |
Data scaling software | XSCALE (May 1, 2016) |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.590 |
High resolution limit [Å] | 3.500 | 3.500 |
Rmerge | 0.026 | 1.261 |
Rmeas | 1.395 | |
Rpim | 0.029 | |
Number of reflections | 10361 | 762 |
<I/σ(I)> | 5.24 | 1.2 |
Completeness [%] | 99.5 | 100 |
Redundancy | 5.3 | 5.5 |
CC(1/2) | 0.986 | 0.506 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 6 | 293 | MES pH 6.0, 50 mM lithium sulfate, 35-39% PEG300, 1% 1,2,3-heptanetriol in monoolein:cholesterol (9:1) |