Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5WB2

US28 bound to engineered chemokine CX3CL1.35 and nanobodies

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2016-08-07
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1.03323
Spacegroup nameP 21 21 2
Unit cell lengths47.170, 128.940, 127.740
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.374 - 3.500
R-factor0.2563
Rwork0.252
R-free0.29620
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4xt1
RMSD bond length0.003
RMSD bond angle0.701
Data reduction softwareXDS (May 1, 2016)
Data scaling softwareXSCALE (May 1, 2016)
Phasing softwarePHASER (2.6.0)
Refinement softwarePHENIX ((1.11.1_2575: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0003.590
High resolution limit [Å]3.5003.500
Rmerge0.0261.261
Rmeas1.395
Rpim0.029
Number of reflections10361762
<I/σ(I)>5.241.2
Completeness [%]99.5100
Redundancy5.35.5
CC(1/2)0.9860.506
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1LIPIDIC CUBIC PHASE6293MES pH 6.0, 50 mM lithium sulfate, 35-39% PEG300, 1% 1,2,3-heptanetriol in monoolein:cholesterol (9:1)

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon