5VP8
I38T mutant of 2009 H1N1 PA Endonuclease
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-03-23 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 90.098, 90.098, 134.108 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.190 - 2.200 |
R-factor | 0.202 |
Rwork | 0.200 |
R-free | 0.23630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5czn |
RMSD bond length | 0.027 |
RMSD bond angle | 2.367 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.280 |
High resolution limit [Å] | 2.200 | 4.740 | 2.200 |
Rmerge | 0.087 | 0.055 | 0.919 |
Rmeas | 0.090 | 0.057 | 0.978 |
Rpim | 0.025 | 0.016 | 0.317 |
Total number of observations | 178503 | ||
Number of reflections | 14303 | ||
<I/σ(I)> | 10.3 | ||
Completeness [%] | 99.3 | 99.6 | 94.6 |
Redundancy | 12.5 | 12.2 | 8.3 |
CC(1/2) | 0.998 | 0.705 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.8 | 291 | 0.1 M HEPES pH 7.8, 1 M Ammonium Sulfate, 10 mM MnCl2, 10 mM MgCl2, 0.5% PVP K15 |