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5VOH

Crystal structure of engineered water-forming NADPH oxidase (TPNOX) bound to NADPH. The G159A, D177A, A178R, M179S, P184R mutant of LbNOX.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.2
Synchrotron siteALS
Beamline8.2.2
Temperature [K]100
Detector technologyCCD
Collection date2016-06-04
DetectorADSC QUANTUM 315r
Wavelength(s)0.9999
Spacegroup nameP 1 21 1
Unit cell lengths107.264, 96.527, 119.061
Unit cell angles90.00, 116.76, 90.00
Refinement procedure
Resolution47.888 - 2.302
R-factor0.1942
Rwork0.192
R-free0.25510
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5er0
RMSD bond length0.002
RMSD bond angle0.525
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.340
High resolution limit [Å]2.3006.2402.300
Rmerge0.1020.0370.560
Rmeas0.1090.0390.604
Rpim0.0400.0140.225
Total number of observations718655
Number of reflections96175
<I/σ(I)>6.9
Completeness [%]100.099.999.9
Redundancy7.57.67.1
CC(1/2)0.9990.933
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5294Crystals were grown in 25 % PEG 3350, 0.1 M Bis-Tris, pH 6.5, 0.2 M (NH4)2SO4 for TPNOX at 21 oC. Crystals were briefly soaked for 1-3 min in the formulation with 15 % (v/v) of ethylene glycol supplemented with 20-30 mM NADPH and were quickly frozen in liquid nitrogen.

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PDB entries from 2024-12-25

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