5VK1
Crystal structure of human MDM4 in complex with a 12-mer lysine-cysteine side chain dithiocarbamate stapled peptide inhibitor PMI
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRL BEAMLINE BL12-2 |
| Synchrotron site | SSRL |
| Beamline | BL12-2 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-11-27 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.97946 |
| Spacegroup name | P 1 |
| Unit cell lengths | 43.294, 47.730, 93.394 |
| Unit cell angles | 76.72, 89.92, 72.60 |
Refinement procedure
| Resolution | 50.000 - 2.690 |
| R-factor | 0.28145 |
| Rwork | 0.279 |
| R-free | 0.33486 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3eqy |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.320 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.750 |
| High resolution limit [Å] | 2.690 | 2.690 |
| Rmerge | 0.132 | 0.614 |
| Number of reflections | 16330 | |
| <I/σ(I)> | 10.3 | 1.1 |
| Completeness [%] | 86.0 | 78.7 |
| Redundancy | 1.9 | 1.8 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 294 | 30% 2-propanol, 30% PEG 3350, and 100 mM Tris-HCl pH 8.5 |
