Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VDW

Human cyclic GMP-AMP synthase (cGAS) in complex with Compound F1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]173
Detector technologyPIXEL
Collection date2016-07-28
DetectorDECTRIS PILATUS 6M
Wavelength(s)1
Spacegroup nameC 1 2 1
Unit cell lengths217.360, 47.998, 86.861
Unit cell angles90.00, 105.29, 90.00
Refinement procedure
Resolution52.417 - 2.711
R-factor0.2239
Rwork0.222
R-free0.25710
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4o67
RMSD bond length0.003
RMSD bond angle0.714
Data reduction softwareAimless
Data scaling softwareAimless (0.3.11)
Phasing softwareREFMAC
Refinement softwarePHENIX (dev_1999)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]52.41775.9402.860
High resolution limit [Å]2.7108.5702.710
Rmerge0.1510.0340.736
Rmeas0.1810.0410.873
Rpim0.0990.0220.467
Number of reflections23537
<I/σ(I)>10.3
Completeness [%]98.395.499
Redundancy3.23.13.4
CC(1/2)0.9800.9970.705
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP727718-20% PEG 3350, 0.2 M ammonium citrate pH 7

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon