5VBQ
CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRDT IN COMPLEX WITH BI2536
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-02-17 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 65.590, 31.000, 69.470 |
Unit cell angles | 90.00, 96.90, 90.00 |
Refinement procedure
Resolution | 34.484 - 1.650 |
Rwork | 0.143 |
R-free | 0.17180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kcx |
RMSD bond length | 0.010 |
RMSD bond angle | 1.397 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.484 | 34.484 | 1.690 |
High resolution limit [Å] | 1.650 | 7.380 | 1.650 |
Rmerge | 0.052 | 0.035 | 0.395 |
Rmeas | 0.061 | 0.042 | 0.464 |
Number of reflections | 33699 | 414 | 2482 |
<I/σ(I)> | 17.23 | 32.52 | 4.95 |
Completeness [%] | 99.1 | 96.1 | 99.4 |
Redundancy | 3.662 | 3.087 | 3.658 |
CC(1/2) | 0.998 | 0.996 | 0.885 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 8 MG/ML BRDT, 25MM HEPES PH 7.5, 75MM SODIUM CHLORIDE, 0.5MM DTT, 50MM MES PH 6.5, 0.1M AMMONIUM, SULFATE, 15% PEG MME 5,000, 10% DMSO, 1 MM BI2536 |