5V2A
Crystal structure of Fab H7.167 in complex with influenza virus hemagglutinin from A/Shanghai/02/2013 (H7N9)
Replaces: 5F45Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-05-11 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | I 21 3 |
Unit cell lengths | 207.276, 207.276, 207.276 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.348 - 4.656 |
R-factor | 0.261 |
Rwork | 0.258 |
R-free | 0.33350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4n5j |
RMSD bond length | 0.016 |
RMSD bond angle | 2.182 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 4.730 |
High resolution limit [Å] | 4.650 | 4.650 |
Rmerge | 0.076 | 0.972 |
Rpim | 0.019 | 0.283 |
Number of reflections | 8097 | 393 |
<I/σ(I)> | 46.7 | 2.15 |
Completeness [%] | 100.0 | 100 |
Redundancy | 18.4 | 12.5 |
CC(1/2) | 0.870 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 10% (w/v) PEG 8000, 0.1 M HEPES, 8% (v/v) ethylene glycol |