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5UU1

Crystal Structure of Human Vaccinia-related kinase 2 (VRK-2) bound to BI-D1870

Replaces:  5TKX
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS BEAMLINE W01B-MX2
Synchrotron siteLNLS
BeamlineW01B-MX2
Temperature [K]100
Detector technologyPIXEL
Collection date2016-10-06
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.45869
Spacegroup nameP 21 21 21
Unit cell lengths54.477, 72.683, 83.042
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.410 - 2.000
R-factor0.184
Rwork0.182
R-free0.22100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2v62
RMSD bond length0.010
RMSD bond angle1.030
Data reduction softwareXDS (MAY 1)
Data scaling softwareAimless (0.5.27)
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.3)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.4102.050
High resolution limit [Å]2.0002.000
Rmerge0.0650.693
Rpim0.0310.320
Number of reflections225041633
<I/σ(I)>13.82.8
Completeness [%]98.497.9
Redundancy5.35.5
CC(1/2)0.9980.891
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.529322.5% PEG 3350; 20 MM MAGNESIUM, CHLORIDE, 0.1M CHC BUFFER pH 7.5, STABILIZED WITH 20% (V/V) GLYCEROL

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