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5UPG

Crystal structure of LpxC from Pseudomonas aeruginosa in complex with PF-5081090

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2017-01-17
DetectorRIGAKU SATURN 944
Wavelength(s)1.54
Spacegroup nameP 1
Unit cell lengths35.840, 47.400, 48.150
Unit cell angles111.27, 109.12, 98.12
Refinement procedure
Resolution40.910 - 1.700
R-factor0.15
Rwork0.147
R-free0.18570
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3uhm
RMSD bond length0.006
RMSD bond angle0.868
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.91040.9101.740
High resolution limit [Å]1.7007.6001.700
Rmerge0.0840.0350.539
Rmeas0.0900.0370.634
Total number of observations208431
Number of reflections287803251908
<I/σ(I)>18.4266.052.38
Completeness [%]97.797.388.6
Redundancy7.24211.2153.289
CC(1/2)0.9981.0000.733
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP290100mM HEPES HCl, pH 7.7, 50mM CaCl2, 4% (w/v) Propanol, 25% (w/v) PEG 3350, PsaeA.00166.a.DG15.PD00471 at 5mg/ml + 1mM ZnCl2 + 1mM BSI 101565 (PF-5081090), cryo: 20% EG: tray 285924g10

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PDB entries from 2024-05-15

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