5UMC
Synthesis of novel seleno ureido containing compounds as SLC-0111 analogs. Investigations on carbonic anhydrases activity, glutathione peroxidase and X-ray crystallography
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
| Synchrotron site | Australian Synchrotron |
| Beamline | MX1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2016-06-07 |
| Detector | ADSC QUANTUM 210 |
| Wavelength(s) | 1.00800 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 42.485, 41.498, 72.280 |
| Unit cell angles | 90.00, 104.42, 90.00 |
Refinement procedure
| Resolution | 41.500 - 2.150 |
| R-factor | 0.19944 |
| Rwork | 0.196 |
| R-free | 0.26112 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4cq0 |
| RMSD bond length | 0.014 |
| RMSD bond angle | 1.658 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 41.500 | 2.210 |
| High resolution limit [Å] | 2.150 | 2.150 |
| Rmerge | 0.225 | 0.793 |
| Rpim | 0.112 | 0.396 |
| Number of reflections | 13493 | 1034 |
| <I/σ(I)> | 5.7 | 2 |
| Completeness [%] | 99.3 | 92.4 |
| Redundancy | 5 | 4.8 |
| CC(1/2) | 0.978 | 0.755 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 281 | concentrated CA II at ~10 mg/mL was set up in SD-2 plates (Molecular Dimensions) with the following ratio of protein plus reservoir plus seeds: 250 nL + 225 nL + 25 nL. The plate was incubated at 8 C and the reservoir condition consisted of 2.9 M ammonium sulfate with 0.1 M Tris buffer at pH 8.3. Dry compound was added to the crystallization drop after crystals had formed and several days before data were collected. |






