5UGM
Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with Edaglitazone
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 103 |
Detector technology | PIXEL |
Collection date | 2016-10-23 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.91841 |
Spacegroup name | I 4 |
Unit cell lengths | 128.740, 128.740, 93.670 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.710 - 2.100 |
R-factor | 0.182 |
Rwork | 0.180 |
R-free | 0.21600 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.711 | 2.210 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.590 | |
Rpim | 0.308 | |
Number of reflections | 44346 | 6482 |
<I/σ(I)> | 2.48 | |
Completeness [%] | 99.3 | 99.9 |
Redundancy | 4.6 | |
CC(1/2) | 0.766 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 293 | 0.8M SODIUM CITRATE, 100mM MOPS, PH 7.6 |