Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5U04

Crystal structure of Zika virus NS5 RNA-dependent RNA polymerase

Replaces:  5TIT
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS BEAMLINE W01B-MX2
Synchrotron siteLNLS
BeamlineW01B-MX2
Temperature [K]100
Detector technologyPIXEL
Collection date2016-10-11
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.47
Spacegroup nameP 43 21 2
Unit cell lengths78.954, 78.954, 210.022
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.657 - 1.900
R-factor0.18
Rwork0.179
R-free0.20740
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2hcn
RMSD bond length0.006
RMSD bond angle0.575
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.11rc2_2531: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.6601.950
High resolution limit [Å]1.9001.900
Number of reflections53499
<I/σ(I)>9.91.8
Completeness [%]99.796.1
Redundancy24.311.1
CC(1/2)0.9900.720
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2910.3M Sodium nitrate, 0.3 Sodium phosphate dibasic, 0.3M Ammonium sulfate 1 M Sodium HEPES; 1 M MOPS (acid) 40% v/v Ethylene glycol; 20 % w/v PEG 8000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon