5SWH
c-Src V281C kinase domain in complex with Rao-IV-151
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-02 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 1 |
Unit cell lengths | 41.819, 64.139, 74.910 |
Unit cell angles | 77.94, 89.50, 89.83 |
Refinement procedure
Resolution | 73.250 - 2.500 |
R-factor | 0.2435 |
Rwork | 0.241 |
R-free | 0.28710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3uqg |
RMSD bond length | 0.012 |
RMSD bond angle | 1.528 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.25) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 73.250 | 73.250 | 2.600 |
High resolution limit [Å] | 2.500 | 9.010 | 2.500 |
Rmerge | 0.186 | 0.054 | 1.225 |
Rmeas | 0.201 | ||
Rpim | 0.075 | ||
Total number of observations | 149393 | ||
Number of reflections | 21164 | ||
<I/σ(I)> | 8.5 | ||
Completeness [%] | 80.3 | 82.7 | 80.8 |
Redundancy | 7.1 | 7.1 | 7 |
CC(1/2) | 0.994 | 0.997 | 0.577 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 100 mM MES pH 6, 8% PEG 3350, 3% glycerol, 10 mM DTT, 10 mM NaOAc |