Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5PGM

SACCHAROMYCES CEREVISIAE PHOSPHOGLYCERATE MUTASE

Experimental procedure
Source typeSYNCHROTRON
Source detailsSRS BEAMLINE PX9.5
Synchrotron siteSRS
BeamlinePX9.5
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date1997-09
DetectorMARRESEARCH
Spacegroup nameP 1 21 1
Unit cell lengths82.497, 93.262, 147.329
Unit cell angles90.00, 90.15, 90.00
Refinement procedure
Resolution30.000 - 2.120
R-factor0.197

*

Rwork0.196
R-free0.22900

*

Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4pgm
RMSD bond length0.016
RMSD bond angle24.210

*

Data reduction softwareMOSFLM
Data scaling softwareCCP4 ((SCALA))
Phasing softwareX-PLOR (3.851)
Refinement softwareX-PLOR (3.851)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.240
High resolution limit [Å]2.1202.120
Rmerge0.0620.184

*

Number of reflections120182
<I/σ(I)>8.34
Completeness [%]90.8

*

81.8

*

Redundancy2.62.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1Vapor diffusion, sitting drop

*

8.65Rigden, D.J., (1998) J.Mol.Biol., 276, 449.

*

Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21dropinositol hexakisphosphate1 (mM)
31reservoirTris-HCl60 (mM)pH8.65
41reservoirlithium sulfate120 (mM)
51reservoirPEG400022-24 (%)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon