5PAC
human factor VIIa in complex with 5-hydroxy-N-(4-oxo-3H-quinazolin-6-yl)-1-[3-[(phenylcarbamoylamino)methyl]phenyl]pyrazole-4-carboxamide at 1.50A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-08-29 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.979000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 95.440, 95.440, 116.990 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.770 - 1.500 |
R-factor | 0.2023 |
Rwork | 0.202 |
R-free | 0.21110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.005 |
RMSD bond angle | 0.983 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0035) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.760 | 33.760 | 1.540 |
High resolution limit [Å] | 1.500 | 6.710 | 1.500 |
Rmerge | 0.116 | 0.042 | 1.770 |
Rmeas | 0.125 | 0.045 | 1.934 |
Total number of observations | 590305 | ||
Number of reflections | 86754 | 1084 | 6346 |
<I/σ(I)> | 9.74 | 23.6 | 1.2 |
Completeness [%] | 99.9 | 94.8 | 100 |
Redundancy | 6.8 | ||
CC(1/2) | 0.998 | 0.997 | 0.455 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 277 | 16 mg/ml protein in 20mM Tris/HCl pH 8.4, 5 mM benzamidine, 0.1 M NaCl, 50 mM CaCl2 mixed 1+1 with 32-35% AMMONIUM SULPHATE, 2% PEG 4000, 0.1 M Bicine-NaOH pH 8.5, 15% glycerol |