5OPI
Crystal structure of the TAPBPR-MHC I peptide editing complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2017-04-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.99999815963 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 205.040, 205.040, 121.300 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.249 - 3.300 |
R-factor | 0.2451 |
Rwork | 0.242 |
R-free | 0.30270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ws6 2yxf 3f8u |
RMSD bond length | 0.007 |
RMSD bond angle | 1.547 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((dev_2747: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.250 | 3.400 |
High resolution limit [Å] | 3.300 | 3.300 |
Number of reflections | 23094 | |
<I/σ(I)> | 8.81 | 0.64 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 26.5 | 27.9 |
CC(1/2) | 0.997 | 0.309 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 19% PEG400, 5% poly-gamma-glutamic acid, and 450 mM sodium cacodylate pH 6.5 |