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5O8F

Structure of a chimaeric beta3-alpha5 GABAA receptor in complex with nanobody Nb25 and pregnanolone

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2015-07-26
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9763
Spacegroup nameI 2 3
Unit cell lengths290.102, 290.102, 290.102
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution205.130 - 3.200
R-factor0.23296
Rwork0.232
R-free0.24240
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4cof
RMSD bond length0.007
RMSD bond angle1.121
Data reduction softwareHKL-2000
Data scaling softwareAimless (0.5.25)
Phasing softwarePHASER (2.5.7)
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.7523.310
High resolution limit [Å]3.1903.190
Rmerge0.6213.131
Rpim0.1310.609
Number of reflections669286677
<I/σ(I)>6.81.2
Completeness [%]100.0100
Redundancy30.425.5
CC(1/2)0.9860.215
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.627714% PEG 6000, 0.1M N-(2-Acetamido)iminodiacetic acid (ADA), 7.6 mM 4-Cyclohexyl-1-Butyl-beta-D-Maltoside (CYMAL-4)

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PDB entries from 2024-05-15

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