5O45
Structure of human PD-L1 in complex with inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-16 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 31.814, 53.682, 80.926 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.735 - 0.990 |
R-factor | 0.1136 |
Rwork | 0.112 |
R-free | 0.13670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5c3t |
RMSD bond length | 0.020 |
RMSD bond angle | 1.760 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.735 | 1.025 |
High resolution limit [Å] | 0.990 | 0.990 |
Rmerge | 0.033 | 0.887 |
Number of reflections | 73554 | |
<I/σ(I)> | 19.7 | |
Completeness [%] | 94.3 | |
Redundancy | 6.7 | |
CC(1/2) | 0.998 | 0.723 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M imidazole malate (pH 8.5) 27% PEG 10000 |