Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NW0

pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-acetamidocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (ligand 17)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2015-09-21
DetectorDECTRIS PILATUS 2M
Wavelength(s)0.9282
Spacegroup nameP 41 2 2
Unit cell lengths94.771, 94.771, 368.359
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.570 - 2.300
R-factor0.1971
Rwork0.195
R-free0.23850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1vcb
RMSD bond length0.007
RMSD bond angle1.206
Data reduction softwareXDS
Data scaling softwareAimless (0.3.11)
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.57049.5702.350
High resolution limit [Å]2.30011.5002.300
Rmerge0.0880.0290.802
Rmeas0.0940.0310.856
Rpim0.0340.0120.297
Number of reflections75814
<I/σ(I)>15
Completeness [%]99.89999.9
Redundancy7.76.68.1
CC(1/2)0.9991.0000.858
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.4291PEG 3350, MgOAc, Sodium cacodylate, DTT

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon