5NU3
Crystal structure of the human bromodomain of CREBBP bound to the inhibitor XDM-CBP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-11-24 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.54187 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 35.860, 49.240, 80.510 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.987 - 1.750 |
R-factor | 0.1696 |
Rwork | 0.168 |
R-free | 0.19980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4nyx |
RMSD bond length | 0.004 |
RMSD bond angle | 0.904 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.12) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.760 | 32.760 | 1.780 |
High resolution limit [Å] | 1.750 | 9.090 | 1.750 |
Rmerge | 0.110 | 0.037 | 0.715 |
Rmeas | 0.128 | 0.045 | 0.832 |
Rpim | 0.064 | 0.024 | 0.415 |
Total number of observations | 55881 | 411 | 2946 |
Number of reflections | 14916 | ||
<I/σ(I)> | 7.4 | 16.5 | 1.8 |
Completeness [%] | 99.6 | 96.8 | 99.8 |
Redundancy | 3.7 | 3.3 | 3.7 |
CC(1/2) | 0.995 | 0.994 | 0.627 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 6.5 | 277 | LiSO4, PEG 3350, ethylene glycol |