5NHG
Crystal structure of the human dihydrolipoamide dehydrogenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 |
Unit cell lengths | 60.060, 113.540, 136.880 |
Unit cell angles | 83.18, 84.75, 81.09 |
Refinement procedure
Resolution | 46.622 - 2.270 |
R-factor | 0.1809 |
Rwork | 0.180 |
R-free | 0.20960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1zmd |
RMSD bond length | 0.007 |
RMSD bond angle | 0.942 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.622 | 46.622 | 2.330 |
High resolution limit [Å] | 2.270 | 10.150 | 2.270 |
Rmerge | 0.058 | 0.026 | 0.541 |
Rmeas | 0.068 | 0.031 | 0.733 |
Total number of observations | 602581 | ||
Number of reflections | 160435 | 1703 | 11068 |
<I/σ(I)> | 13.68 | 41.51 | 1.46 |
Completeness [%] | 98.1 | 93.3 | 91.9 |
Redundancy | 3.756 | 3.824 | 2.106 |
CC(1/2) | 0.999 | 0.999 | 0.660 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.45 | 293 | 0.1 M Bis-Tris (pH 7.45), 0.2 M MgCl2, 25 (w/v)% PEG 3350 |