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5N7E

Crystal structure of the Dbl-homology domain of Bcr-Abl in complex with monobody Mb(Bcr-DH_4).

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2015-08-21
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)0.999870
Spacegroup nameC 1 2 1
Unit cell lengths164.122, 55.568, 45.031
Unit cell angles90.00, 105.46, 90.00
Refinement procedure
Resolution43.402 - 1.647
R-factor0.1852
Rwork0.183
R-free0.21940
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Chain A: homology model based on 4JE4 Chain B: homology model based on 2Z0Q
RMSD bond length0.006
RMSD bond angle0.808
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.10_2155)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.4021.706
High resolution limit [Å]1.6471.647
Rmerge0.0370.592
Rpim0.0220.347
Number of reflections47055
<I/σ(I)>18.29
Completeness [%]99.393.25
Redundancy3.8
CC(1/2)0.9990.946
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52910.12 M monosaccharides (0.2M D-Glucose; 0.2M D-Mannose; 0.2M D-Galactose; 0.2M L-Fucose; 0.2M D-Xylose; 0.2M N-Acetyl-D-Glucosamine); 0.1 M buffer system 2 pH 7.5 (Sodium HEPES; MOPS (acid)); 50% precipitant mix 1 (40% v/v PEG 500* MME; 20 % w/v PEG 20000)

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PDB entries from 2024-05-15

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