5LVQ
Crystal structure of human PCAF bromodomain in complex with compound-D (CPD-D), N-methyl-2-(tetrahydro-2H-pyran-4-yloxy)benzamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-10-17 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.91997 |
Spacegroup name | H 3 |
Unit cell lengths | 99.859, 99.859, 100.762 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.540 - 2.050 |
R-factor | 0.18235 |
Rwork | 0.180 |
R-free | 0.21795 |
RMSD bond length | 0.016 |
RMSD bond angle | 1.712 |
Data reduction software | iMOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 65.620 | 2.160 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.054 | 0.616 |
Number of reflections | 23526 | |
<I/σ(I)> | 13.9 | 2.6 |
Completeness [%] | 100.0 | 100 |
Redundancy | 4.8 | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277.15 | 21-35% PEG 3350, 0.1 M Bis-Tris pH 5.5-7.0 or 21-40% medium-molecular-weight PEG smears (MMW PEG smears) buffered either with 0.1 M Bis-Tris pH 6.0-7.5 or 0.1 M Tris pH 7.5-8.8 |