Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5LPO

tRNA guanine Transglycosylase (TGT) in co-crystallized complex with 6-amino-2-(methylamino)-4-(2-((2R,3R,4R,5R)-3,4,5-trimethoxytetrahydrofuran-2-yl)ethyl)-1H-imidazo[4,5-g]quinazolin-8(7H)-one

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2016-04-22
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.918408
Spacegroup nameC 1 2 1
Unit cell lengths84.662, 64.819, 71.241
Unit cell angles90.00, 93.53, 90.00
Refinement procedure
Resolution42.440 - 1.420
R-factor0.1335
Rwork0.132
R-free0.16270
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1p0d
RMSD bond length0.005
RMSD bond angle0.826
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10.1_2155: 1492))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.4401.500
High resolution limit [Å]1.4201.420
Rmerge0.322
Number of reflections71176
<I/σ(I)>17.22.9
Completeness [%]97.890.1
Redundancy32.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.528813% PEG 8000, 100mM MES, 1mM DTT, 10% DMSO

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon