Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5LFA

Crystal structure of iron-sulfur cluster containing bacterial (6-4) photolyase PhrB - Y424F mutant with impaired DNA repair activity

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2014-02-17
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.96863
Spacegroup nameP 2 21 21
Unit cell lengths56.183, 94.441, 103.579
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution69.790 - 2.500
R-factor0.18388
Rwork0.181
R-free0.23961
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4dja
RMSD bond length0.010
RMSD bond angle1.303
Data reduction softwareXDS (BUILT=20160514)
Phasing softwarePHASER (2.5.6)
Refinement softwareREFMAC (5.8.0151)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]69.7902.560
High resolution limit [Å]2.5002.500
Rmerge0.2000.750
Number of reflections19657
<I/σ(I)>5.32.1
Completeness [%]99.5100
Redundancy5.35.3
CC(1/2)0.963
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6298100 MM MES, 5% PEG400, PH 6.0,

237992

PDB entries from 2025-06-25

PDB statisticsPDBj update infoContact PDBjnumon