5LD1
Crystal Structure of Polyphosphate Kinase from Meiothermus ruber bound to ATP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-14 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.000010 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 168.014, 168.014, 95.032 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 118.800 - 2.090 |
R-factor | 0.165 |
Rwork | 0.163 |
R-free | 0.20200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lc9 |
RMSD bond length | 0.010 |
RMSD bond angle | 0.970 |
Data reduction software | autoPROC (1.0.5) |
Data scaling software | Aimless (0.5.15) |
Phasing software | MOLREP (11.4.05) |
Refinement software | BUSTER-TNT (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 168.010 | 2.210 |
High resolution limit [Å] | 2.090 | 2.090 |
Rmerge | 0.260 | 1.586 |
Number of reflections | 80333 | |
<I/σ(I)> | 11.7 | 2.4 |
Completeness [%] | 100.0 | 100 |
Redundancy | 18.4 | 19.2 |
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | PEG3350, Li2SO4 |