5LAS
HIF prolyl hydroxylase 2 (PHD2-R281C/P317C/R396T) cross-linked to HIF-1alpha NODD-L397C/D412C and N-oxalylglycine (NOG) (complex-3)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-09-26 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.83441 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 43.579, 73.642, 70.146 |
Unit cell angles | 90.00, 91.25, 90.00 |
Refinement procedure
Resolution | 43.569 - 2.100 |
R-factor | 0.187 |
Rwork | 0.185 |
R-free | 0.22120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3hqr |
RMSD bond length | 0.004 |
RMSD bond angle | 0.702 |
Data reduction software | HKL-2000 (706E) |
Data scaling software | HKL-2000 (706E) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.569 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.175 | 0.681 |
Number of reflections | 26258 | |
<I/σ(I)> | 7.75 | 2.5 |
Completeness [%] | 99.2 | 98.8 |
Redundancy | 3.4 | 3.2 |
CC(1/2) | 0.982 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 0.1 M citrate pH 5.0, 20 % w/v polyethylene glycol 6000 |