5KE2
Crystal structure of SETDB1 Tudor domain in complex with inhibitor XST06472A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-10-03 |
Detector | RIGAKU SATURN A200 |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.816, 63.891, 69.793 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.130 - 1.560 |
R-factor | 0.1923 |
Rwork | 0.191 |
R-free | 0.21850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dlm |
RMSD bond length | 0.009 |
RMSD bond angle | 1.403 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Refinement software | REFMAC (5.8.0151) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.590 |
High resolution limit [Å] | 1.560 | 4.230 | 1.560 |
Rmerge | 0.037 | 0.027 | 0.471 |
Rmeas | 0.041 | ||
Rpim | 0.017 | ||
Total number of observations | 183247 | ||
Number of reflections | 35386 | ||
<I/σ(I)> | 19.1 | ||
Completeness [%] | 99.0 | 98.5 | 87.1 |
Redundancy | 5.2 | 4.9 | 3.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.2 | 295 | 25% PEG 3350, 0.2M LiSO4, 0.1M Bis-Tris pH6.5 |