Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5JYD

Crystal Structure of a Putative Short Chain Dehydrogenase from Burkholderia cenocepacia

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2013-08-14
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97856
Spacegroup nameP 1 21 1
Unit cell lengths86.800, 107.820, 117.690
Unit cell angles90.00, 97.63, 90.00
Refinement procedure
Resolution48.937 - 1.650
R-factor0.1425
Rwork0.141
R-free0.17410
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.022
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.0001.690
High resolution limit [Å]1.6507.3801.650
Rmerge0.0630.0270.469
Number of reflections255624
<I/σ(I)>11.7429.422.38
Completeness [%]99.394.399.8
Redundancy3.15
CC(1/2)0.998
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7290BuceA.00010.v.B2.PS01749 at 26.4 mg/ml in 20 mM Hepes pH 7.0, 0.3M NaCl, 5% Glycerol, 1 mM TCEP mixed 1:1 with MCSG1E(E07): 20% PEG-3350,0.2 M Ammonium Iodide.MCSG1E: batch of MCSG1 screens delivered from production core was missing 2 wells. Cryoprotected with 15%EG

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon