5JWC
Structure of NDH2 from plasmodium falciparum in complex with RYL-552
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-09-21 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979 |
Spacegroup name | I 41 |
Unit cell lengths | 192.603, 192.603, 92.025 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.453 - 2.051 |
R-factor | 0.1888 |
Rwork | 0.187 |
R-free | 0.22050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g6g |
RMSD bond length | 0.009 |
RMSD bond angle | 1.271 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.120 |
High resolution limit [Å] | 2.050 | 4.420 | 2.050 |
Rmerge | 0.083 | 0.047 | 0.739 |
Total number of observations | 558294 | ||
Number of reflections | 105189 | ||
<I/σ(I)> | 12.4 | ||
Completeness [%] | 99.9 | 98.7 | 100 |
Redundancy | 5.3 | 5 | 5.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | protein (10mg/ml) reservoir solution (2.7M sodium acetate trihydrate, pH screen kit from Hampoton Research at 4.8 or 10.0 ) |