Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5J01

Structure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 1
Synchrotron siteSOLEIL
BeamlinePROXIMA 1
Temperature [K]100
Detector technologyPIXEL
Collection date2013-12-03
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9786
Spacegroup nameP 21 21 2
Unit cell lengths100.930, 262.580, 69.040
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.755 - 3.390
R-factor0.2057
Rwork0.204
R-free0.23390
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4faw
RMSD bond length0.012
RMSD bond angle0.445
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.0003.480
High resolution limit [Å]3.39015.1503.390
Rmerge0.3150.0534.762
Number of reflections26308
<I/σ(I)>11.6762.220.68
Completeness [%]99.795.896.9
Redundancy28.117.5
CC(1/2)0.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP301.1550 mM Na-Cacodylate pH 6.5, 225 mM NH4Cl, 95 mM MgCl2, 22% MPD

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon