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5IN4

Crystal Structure of GDP-mannose 4,6 dehydratase bound to a GDP-fucose based inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]80
Detector technologyCCD
Collection date2014-07-15
DetectorRAYONIX MX300HE
Wavelength(s)1.0
Spacegroup nameP 1 21 1
Unit cell lengths63.028, 140.077, 85.953
Unit cell angles90.00, 106.24, 90.00
Refinement procedure
Resolution29.575 - 1.600
R-factor0.1476
Rwork0.146
R-free0.17620
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.10_2142)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.00030.0001.660
High resolution limit [Å]1.6003.4501.600
Rmerge0.0790.0450.525
Rmeas0.094
Rpim0.051
Total number of observations600654
Number of reflections184649
<I/σ(I)>10.6
Completeness [%]98.699.889.9
Redundancy3.33.52.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.2 M potassium fluoride and 20% PEG 3350. The crystals were briefly transferred to a cryoprotectant consisting of 0.2 M potassium fluoride, 20% PEG 3350, and 20% glycerol and flash frozen in liquid nitrogen

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