Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5IIE

STRUCTURE OF THE UNLIGANDED ANTI-HIV ANTIBODY DH501 THAT BINDS GP120 V3 GLYCAN AND THE BASE OF V3

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-BM
Synchrotron siteAPS
Beamline22-BM
Temperature [K]93
Detector technologyCCD
Collection date2015-08-15
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths76.113, 89.028, 132.131
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.477 - 2.800
R-factor0.2118
Rwork0.206
R-free0.27290
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3aaz 4q2z
RMSD bond length0.003
RMSD bond angle0.782
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.850
High resolution limit [Å]2.8002.800
Rmerge0.1050.724
Number of reflections22224
<I/σ(I)>14.42.2
Completeness [%]97.496.1
Redundancy6.96.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52930.1 M HEPES pH 6.5, 20% PEG 6,000

231029

PDB entries from 2025-02-05

PDB statisticsPDBj update infoContact PDBjnumon