5HT2
Mouse Tdp2 reaction product (5'-phosphorylated DNA)-Mg2+ complex with 1-N6-etheno-adenine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-12 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.884, 68.604, 167.247 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.928 - 1.430 |
R-factor | 0.1178 |
Rwork | 0.116 |
R-free | 0.15000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4gz1 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.180 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.480 |
High resolution limit [Å] | 1.430 | 3.080 | 1.430 |
Rmerge | 0.051 | 0.040 | 0.599 |
Number of reflections | 114190 | ||
<I/σ(I)> | 15.6 | ||
Completeness [%] | 97.4 | 95.1 | 86.6 |
Redundancy | 3.9 | 4.2 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295 | PEG3350, 200mM NaOAc, 20 mM MgOAc, 100 mM HEPES |