5HA6
Crystal structure of human syncytin-1 fusion subunit
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-06-14 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.84592 |
Spacegroup name | H 3 2 |
Unit cell lengths | 48.118, 48.118, 378.911 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.422 - 2.001 |
R-factor | 0.2005 |
Rwork | 0.199 |
R-free | 0.23310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jf3 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.266 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.8) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.100 | 42.100 | 2.050 |
High resolution limit [Å] | 2.000 | 8.950 | 2.000 |
Rmerge | 0.078 | 0.030 | 0.751 |
Rpim | 0.025 | 0.010 | 0.257 |
Total number of observations | 126807 | 1453 | 7202 |
Number of reflections | 12052 | ||
<I/σ(I)> | 20.9 | 54.2 | 3 |
Completeness [%] | 99.7 | 99.5 | 96.1 |
Redundancy | 10.5 | 8.1 | 8.8 |
CC(1/2) | 0.999 | 0.999 | 0.780 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 298 | 5% (w/v) PEG 3350, 0.1 M Sodium Acetate-HCl |