5FY8

Crystal structure of human JMJD2A in complex with D-threo-isocitrate

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I04
Synchrotron site	Diamond
Beamline	I04
Temperature [K]	100
Detector technology	PIXEL
Collection date	2015-05-07
Detector	DECTRIS PILATUS 6M
Spacegroup name	P 21 21 2
Unit cell lengths	100.930, 148.910, 57.050
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	28.980 - 2.343
R-factor	0.1873
Rwork	0.185
R-free	0.22940
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	PDB NETRY 5A7W
Data reduction software	XDS
Data scaling software	SCALA
Phasing software	DIMPLE
Refinement software	PHENIX ((PHENIX.REFINE))

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	28.980	2.400
High resolution limit [Å]	2.340	2.340
Rmerge	0.060	0.770
Number of reflections	36894
<I/σ(I)>	20.5	2.2
Completeness [%]	99.7	96.8
Redundancy	6.5	6.7

Crystallization Conditions

crystal ID	method	pH	temperature	details
1		6		0.1M BIS-TRIS PH 6.0 -- 0.15M AMMONIUM SULFATE -- 28% PEG3350