5FY0
Crystal structure of JmjC domain of human histone demethylase UTY in complex with L-malate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-23 |
Detector | DECTRIS PILATUS 2M |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 91.610, 110.740, 120.750 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 70.587 - 2.140 |
R-factor | 0.1815 |
Rwork | 0.179 |
R-free | 0.22510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3zli |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | DIMPLE |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 70.590 | 2.200 |
High resolution limit [Å] | 2.140 | 2.140 |
Rmerge | 0.140 | 1.500 |
Number of reflections | 68161 | |
<I/σ(I)> | 10 | 1.1 |
Completeness [%] | 99.7 | 99.9 |
Redundancy | 6.7 | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 6.5 | 0.1M BIS-TRIS PH 6.5 -- 25% PEG3350 |