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5F72

De novo design and crystallographic validation of antibodies targeting a pre-selected epitope

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2015-04-17
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91731
Spacegroup nameP 1 21 1
Unit cell lengths70.499, 69.808, 99.562
Unit cell angles90.00, 92.23, 90.00
Refinement procedure
Resolution29.690 - 1.850
R-factor0.22531
Rwork0.223
R-free0.26531
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3ivk 1x2j
RMSD bond length0.023
RMSD bond angle2.020
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0103)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0001.930
High resolution limit [Å]1.8501.850
Rmerge0.0490.397
Number of reflections85901
<I/σ(I)>11.2
Completeness [%]99.1
Redundancy3.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529120% PEG3000, 200mM Sodium Acetate

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PDB entries from 2024-05-15

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