5F5I
Crystal Structure of human JMJD2A complexed with KDOOA011340
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-08-07 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.92000 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 101.030, 149.580, 57.920 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.010 - 2.630 |
R-factor | 0.2124 |
Rwork | 0.211 |
R-free | 0.24330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2oq7 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.212 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.29) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.010 | 54.010 | 2.700 |
High resolution limit [Å] | 2.630 | 11.760 | 2.630 |
Rmerge | 0.105 | 0.028 | 0.907 |
Rpim | 0.043 | 0.013 | 0.368 |
Total number of observations | 176830 | 2108 | 13209 |
Number of reflections | 26629 | ||
<I/σ(I)> | 15.5 | 52.6 | 2.3 |
Completeness [%] | 99.2 | 98.4 | 99.8 |
Redundancy | 6.6 | 5.9 | 6.9 |
CC(1/2) | 0.998 | 1.000 | 0.728 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.9 | 277 | 0.1M bis-tris pH 5.9 , 0.15M ammonium sulfate , 13% PEG3350 |