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5EW4

Crystal structure of C9ORF72 Antisense CCCCGG repeat RNA associated with Lou Gehrig's disease and frontotemporal dementia, crystallized with Sr2+

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2014-04-14
DetectorADSC QUANTUM 315r
Wavelength(s)0.97924
Spacegroup nameP 21 21 21
Unit cell lengths41.020, 47.615, 58.900
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution23.923 - 1.470
R-factor0.2179
Rwork0.215
R-free0.23890
Structure solution methodAB INITIO
RMSD bond length0.024
RMSD bond angle0.508
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareACORN
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.500
High resolution limit [Å]1.4703.9901.470
Rmerge0.0320.0190.542
Rmeas0.0360.0220.648
Rpim0.0160.0100.343
Total number of observations90931
Number of reflections20000
<I/σ(I)>14.1
Completeness [%]98.691.789.4
Redundancy4.54.42.9
CC(1/2)0.9980.713
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72930.04 M sodium cacodylate, 50 mM KCl, 0.04 M LiCl, 0.012 M spermine, 0.08 M strontium chloride, 10% (v/v) (+/-)-2-methyl-2,4-pentanediol, equilibrated against 35% (v/v) (+/-)-2-methyl-2,4-pentanediol

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PDB entries from 2024-05-15

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