5ESD
Crystal Structure of M. tuberculosis MenD bound to ThDP and Mn2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2011-11-10 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.95369 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 98.625, 138.657, 165.386 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.811 - 2.250 |
R-factor | 0.2117 |
Rwork | 0.210 |
R-free | 0.23540 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.802 |
Data scaling software | Aimless (0.1.27) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.811 | 19.810 | 2.290 |
High resolution limit [Å] | 2.250 | 12.320 | 2.250 |
Rmerge | 0.430 | 0.045 | 6.410 |
Rpim | 0.066 | 0.007 | 1.054 |
Total number of observations | 4650184 | 21820 | 197267 |
Number of reflections | 107885 | ||
<I/σ(I)> | 14.7 | 83.8 | 1.1 |
Completeness [%] | 99.8 | 76.8 | 100 |
Redundancy | 43.1 | 38.1 | 37.4 |
CC(1/2) | 0.997 | 1.000 | 0.615 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 8% PEG 6000, 0.1M HEPES pH 7.5 |