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5E4N

3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase from Mycobacterium tuberculosis with D-tyrosine bound in the tyrosine and phenylalanine binding sites

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX1
Synchrotron siteAustralian Synchrotron
BeamlineMX1
Temperature [K]100
Detector technologyCCD
Collection date2013-02-07
DetectorADSC QUANTUM 210r
Wavelength(s)0.953700
Spacegroup nameP 32 2 1
Unit cell lengths205.739, 205.739, 66.644
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution47.370 - 2.050
R-factor0.2004
Rwork0.199
R-free0.22870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3nv8
RMSD bond length0.011
RMSD bond angle1.452
Data scaling softwareAimless (0.1.27)
Phasing softwareMOLREP
Refinement softwareREFMAC (5.7.0029)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.37047.3702.090
High resolution limit [Å]2.05011.2302.050
Rmerge0.1650.0271.233
Rpim0.0510.0090.383
Total number of observations1152805632856937
Number of reflections101243
<I/σ(I)>14.964.62.5
Completeness [%]100.098.6100
Redundancy11.49.511.3
CC(1/2)0.9981.0000.625
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52930.1 M TRIS-HCL, PH 7.5, 1.5 M AMMONIUM SULFATE, 12% V/V GLYCEROL. CRYSTALS WERE SOAKED IN THE SAME SOLUTION WITH AN ADDITIONAL 10% V/V GLYCEROL AND 5 MM D-TYROSINE FOR 24 HRS

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PDB entries from 2024-05-15

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