Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5DZF

Crystal Structure of the catalytic nucleophile mutant of VvEG16 in complex with a mixed-linkage glucan octasaccharide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyCCD
Collection date2014-12-11
DetectorRAYONIX MX300HE
Wavelength(s)0.8266
Spacegroup nameP 43 21 2
Unit cell lengths74.330, 74.330, 149.280
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.974 - 1.650
R-factor0.1571
Rwork0.155
R-free0.20050
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1umz
Data scaling softwareXDS (January 10, 2014)
Phasing softwarePHASER (2.5.5)
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]42.9741.590
High resolution limit [Å]1.5506.9301.550
Rmerge0.2050.0383.250
Rmeas0.2140.0393.667
Total number of observations738087
Number of reflections609978094159
<I/σ(I)>10.8552.350.41
Completeness [%]99.299.393
Redundancy12.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52775 mM DTT, 5 mM G3GGG3GGG, 0.5 mM GG3GGG3GGG, 1 mM EDTA, 0.1 M HEPES, 1.6 M (NH4)2SO4

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon